individual publications

• academic article

  • Direct sequencing of the human microbiome readily reveals community differences.  Genome Biology.  5:210-219. 2010
  • QIIME allows integration and analysis of high-throughput community sequencing data.  Nature Methods.  7:335-336. 2010
  • Host-bacterial coevolution and the search for new drug targets.  Current Opinion in Chemical Biology.  12:109-114. 2008
  • Evolution of symbiotic bacteria in the distal human intestine.  PLoS Biology.  5. 2007
  • The human microbiome project.  Nature.  449:804-810. 2007
  • The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology.  Environmental Microbiology.  9:3-4. 2007
  • An extended view of ourselves: ecological and evolutionary forces that shape microbial diversity and genome content in the human intestine.  Cell.  124:837-848. 2006
  • An obesity-associated gut microbiome with increased capacity for energy harvest.  Nature.  444:1027-1031. 2006
  • Microbial ecology: human gut microbes associated with obesity.  Nature.  444:1022-1023. 2006
  • Reciprocal transplantation of gut microbial communities from zebrafish and mice into gnotobiotic recipients reveals host habitat selection of a microbiota.  Cell.  127:423-433. 2006
  • The human intestinal microbiota and its relationship to energy balance.  Scandinavian Journal of Food and Nutrition.  50:121-123. 2006
  • Host-bacterial mutualism in the human intestine.  Science.  307:1915-1920. 2005
  • Obesity alters gut microbial ecology.  Proceedings at the National Academy of Science USA.  31:11070-11075. 2005
  • Getting a grip on things: how do communities of bacterial symbionts become established in our intestine.  Nature Immunology.  5:569-573. 2004

• chapter

  • The human intestinal microbiota and microbiome.  Textbook of Gastroenterology, Fifth edition. 2011
  • The human intestinal microbiota and microbiome.  Textbook of Gastroenterology. 635. 2009

• document part

  • Stability of microbial communities in mesophilic anaerobic digesters 2010
  • An evolutionary perspective on obesity. 2008
  • Analysis of distal gut in adults 2007
  • Evolutionary ecology of the mammalian gut microbiota. 2006
  • Microbial diversity of our inner selves. 2005
• Extending our view of self: the human gut microbiome initiative (HGMI) 2005