individual publications

• academic article

  • A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets.  PLoS Computational Biology.  9. 2013
  • Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys. .  The ISME Journal.  6:1273-1276. 2012
  • Host remodeling of the gut microbiome and metabolic changes during pregnancy..  Cell.  150:470-480. 2012
  • IL-1β promotes susceptibility of Toll-like receptor 5 KO mice to colitis.  Gut.  61:373-384. 2012
  • Impact of training sets on classification of high-throughput bacterial 16S rRNA gene surveys..  International Society for Microbial Ecology Journal.  6:94-103. 2012
  • Responses of gut microbiota to weight loss in obese and lean mice.  Obesity.  20:738-747. 2012
  • Transient inability to manage Proteobacteria promotes chronic gut inflammation in TLR5-deficient mice..  Cell Host Microbe.  12:139-152. 2012
  • Bacterial community structures are unique and resilient in full-scale bioenergy systems.  Proceedings of the National Academy of Sciences of the United States of America.  108:4158-4163. 2011
  • Development of the infant gut microbiota: insights from high-throughput sequencing.  Gastroenterology.  140:1713-1719. 2011
  • Direct sequencing of the human microbiome readily reveals community differences.  Genome Biology.  5:210-219. 2010
  • Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5.  Science.  328:228-231. 2010
  • QIIME allows integration and analysis of high-throughput community sequencing data.  Nature Methods.  7:335-336. 2010
  • Supervised classification of microbiota mitigates mislabeling errors.  International Society for Microbial Ecology Journal.  5:570-573. 2010
  • A core gut microbiome in obese and lean twins.  Nature.  457:480-484. 2009
  • Evolution of mammals and their gut microbes.  Science.  320:1647-1651. 2008
  • Host-bacterial coevolution and the search for new drug targets.  Current Opinion in Chemical Biology.  12:109-114. 2008
  • Worlds within worlds: evolution of the vertebrate gut microbiota.  Nature Reviews Microbiology.  6:776-788. 2008
  • The human microbiome project.  Nature.  449:804-810. 2007
  • Obesity alters gut microbial ecology.  Proceedings at the National Academy of Science USA.  31:11070-11075. 2005

• article

  • Responses of gut microbiota to weight loss in obese and lean mice 2012