individual publications

• academic article

  • Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics..  Journal of Proteomics Research.  2012
  • Maize HapMap2 identifies extant variation from a genome in flux..  Nature Genetics.  44:803-807. 2012
  • Shoot thinning and cluster thinning impact yield, fruit composition, and wine quality of Corot noir..  American Journal of Enology and Viticulture.  63:49-56. 2012
  • The functional network of the Arabidopsis thaliana plastoglobule proteome based on quantitative proteomics and genome-wide co-expression analysis..  Plant Physiology.  158:1172-1192. 2012
  • Comparison of odor-active compounds in grapes and wines from Vitis vinifera and non-foxy American grape species.  Journal of Agricultural and Food Chemistry.  59:10657-10664. 2011
  • Impact of Shoot Thinning and Harvest Date on Yield Components, Fruit Composition, and Wine Quality of Marechal Foch.  American Journal of Enology and Viticulture.  62:32-41. 2011
  • Large-Scale Label-Free Quantitative Proteomics of the Pea aphid-Buchnera Symbiosis..  Molecular Cell Proteomics.  10. 2011
  • MASCP Gator: An aggregation portal for the visualization of Arabidopsis proteomics data..  Plant Physiology.  155:259-70. 2011
  • Reconstruction of metabolic pathways, protein expression and homeostasis machineries across maize bundle sheath and mesophyll chloroplasts; large scale quantitative proteomics using the first maize genome assembly.  Plant Physiology.  152:1219-1250. 2010
  • Requirement of calcium binding, myristoylation, and protein-protein interaction for the copine BON1 function in Arabidopsis.  Journal of Biological Chemistry.  285:29884-29891. 2010
  • Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.  The Plant Cell.  22:3509-3542. 2010
  • The developmental dynamics of the maize leaf transcriptome as revealed through ultra high throughput sequencing.  Nature Genetics.  42:1060-1067. 2010
  • A Workflow for Large Scale Detection and Validation of Peptide Modifications by RPLC-LTQ-Orbitrap; application to the Arabidopsis thaliana leaf proteome and an on-line modified peptide library. .  Analytical Chemistry.  81:8015-24. 2009
  • Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs.  BMC Genomics.  10:641. 2009
  • Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs.  BMC Genomics.  10:641. 2009
  • Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes.  BMC Evolutionary Biology.  9:264. 2009
  • PPDB, the Plant Proteomics Database at Cornell.  Nucleic Acids Research.  37. 2009
  • Positively selected disease response orthologous gene sets in the cereals identified using Sorghum bicolor L. Moench expression profiles and comparative genomics.  Molecular Biology and Evolution.  26:2015-2030. 2009
  • Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells.  Mol Cell Proteomics.  9:1609-38. 2008
  • Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes.  BMC Evolutionary Biology.  8:233. 2008
  • Role of copper,zinc superoxide dismutase in catalyzing nitrotyrosine formation in murine liver.  Free Radical Biology and Medicine.  45:611-618. 2008
  • Short-term genome evolution of Listeria monocytogenes in a non-controlled environment.  BMC Genomics.  9:539. 2008
  • Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.  PLOS One.  3. 2008
  • Transcriptome‐wide identification of novel imprinted genes in neonatal mouse brain.  PLoS One.  3. 2008
  • Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock.  PLoS One.  2. 2007
  • Development and Characterization of a Normalized Canine retinal cDNA Library for Genomic and Expression Studies.  Investigative Ophthamology and Visual Science.  47:2632-2638. 2006
  • The BON/CPN gene family represses cell death and promotes cell growth in Arabidopsis.  The Plant Journal.  45:166-179. 2006
  • The oligomeric stromal proteome of A. thaliana chloroplasts.  Mol Cell Proteomic.  5:114-133. 2006
  • Functional differentiation of Bundle Sheath and Mesophyll maize chloroplasts determined by Comparative proteomics.  The Plant Cell.  17:3111-3140. 2005
  • Analysis of curated and predicted plastid subproteomes of Arabidopsis thaliana; Subcellular compartmentalization leads to distinctive proteome properties.  Plant Physiology.  135:723-734. 2004
  • In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts; new proteins, new functions and a plastid proteome database.  Plant Cell.  16:478-499. 2004
  • New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast and versatile fractionation strategy.  Journal of Biological Chemistry.  279:49367-49383. 2004
  • Ethylene insensitivity conferred by Arabidopsis ERS gene.  Science.  269:1712-1714. 1995

• document part

  • VitisGen: A coordinated effort in grape genotyping, phenotyping, and marker-assisted selection 2012
  • Characterization of odor-active compounds in grapes and wines produced from non-vinifera species important to grape breeding 2011
  • Aroma composition of a native American grape species (Vitis cinerea) wine by SPME-GC/O/MS. 2010
  • Impacts of shoot thinning and harvest date on the polyphenol and volatile composition of Marechal Foch 2010